Artificial intelligence and One Health: potential for spillover prediction?
M Koopmans, I Csabai, D Remondini, E Snary, F Aarestrup
The Lancet Infectious Diseases, 2025
Clinical considerations on antimicrobial resistance potential of complex microbiological samples
N Solymosi, AG Tóth, SÁ Nagy, I Csabai, C Feczkó, T Reibling, T Németh
PeerJ 13, e18802, 2025
ViralPrimer: a web server to monitor viral nucleic acid amplification tests’ primer efficiency during pandemics, with emphasis on SARS-CoV-2 and Mpox
N Deutsch, Z Dosztányi, I Csabai, A Medgyes-Horváth, OA Pipek, J Stéger, …
Bioinformatics 40 (11), btae657, 2024
Time-series sewage metagenomics distinguishes seasonal, human-derived and environmental microbial communities potentially allowing source-attributed surveillance
Á Becsei, A Fuschi, S Otani, R Kant, I Weinstein, P Alba, J Stéger, …
Nature communications 15 (1), 7551, 2024
Metagenomic peek into a corn mummy
N Solymosi, B Pap, SÁ Nagy, AG Tóth, FJ Kevély, G Maróti, I Csabai, …
bioRxiv, 2024.07. 02.601727, 2024
Comparing full variation profile analysis with the conventional consensus method in SARS-CoV-2 phylogeny
RN Fiam, C István, S Norbert
Briefings in Bioinformatics 25 (4), 2024
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses
N Rahman, C O’cathail, A Zyoud, A Sokolov, B Oude Munnink, B Grüning, …
Microbial genomics 10 (2), 001188, 2024
Systematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samples
OA Pipek, A Medgyes-Horváth, J Stéger, K Papp, D Visontai, …
Nature Communications 15 (1), 517, 2024
SARS-CoV-2 receptor-binding domain deep mutational AlphaFold2 structures
O Kilim, A Mentes, B Pál, I Csabai, Á Gellért
Scientific Data 10 (1), 134, 2023
Automated prediction of COVID-19 severity upon admission by chest X-ray images and clinical metadata aiming at accuracy and explainability
A Olar, A Biricz, Z Bedőházi, B Sulyok, P Pollner, I Csabai
Scientific Reports 13 (1), 4226, 2023
Porcine cytomegalovirus detection by nanopore-based metagenomic sequencing in a Hungarian pig farm
AG Tóth, R Fiam, Á Becsei, S Spisák, I Csabai, L Makrai, T Reibling, …
bioRxiv, 2022.12. 28.522123, 2022
Identification of mutations in SARS-CoV-2 PCR primer regions
A Mentes, K Papp, D Visontai, J Stéger, I Csabai, A Medgyes-Horváth, …
Scientific Reports 12 (1), 18651, 2022
Detection of antimicrobial resistance genes in urban air
Á Becsei, N Solymosi, I Csabai, D Magyar
MicrobiologyOpen 10 (6), e1248, 2021
Mobile antimicrobial resistance genes in probiotics
AG Tóth, I Csabai, MF Judge, G Maróti, Á Becsei, S Spisák, N Solymosi
Antibiotics 10 (11), 1287, 2021
A genetikai adatok szerepe a járványok elleni küzdelemben
Á Becsei, OA Pipek, P Pollner, I Csabai
Scientia et Securitas 2 (1), 12-16, 2021
A glimpse of antimicrobial resistance gene diversity in kefir and yoghurt
AG Tóth, I Csabai, G Maróti, Á Jerzsele, A Dubecz, ÁV Patai, MF Judge, …
Scientific reports 10 (1), 22458, 2020